Magnus, Use 'madd' in place of the second (any and subsequent) 'mset' commands.
Cheers, Warren > -----Original Message----- > From: Magnus Andersson [mailto:m...@farma.ku.dk] > Sent: Monday, March 16, 2009 10:39 AM > To: pymol-users@lists.sourceforge.net > Subject: [PyMOL] pymol movie > > Hi, > > I have a problem appending two scenes in a movie. First I want to make a > turn of the protein. Then I want to move between a series of 50 morphs of > a conformational change of the protein. The problem is that the last mset > command seems to override the first, so that I only see the last scene and > not the first. > > Here's my script: > > import __main__ > __main__.pymol_argv = [ 'pymol', '-Gi' ] > > import pymol > > pymol.finish_launching() > > from pymol import cmd > > # load all states (atomic configurations) that we will use > > cmd.load('morph_1.pdb','mov',1) > cmd.load('morph_2.pdb','mov',2) > cmd.load('morph_3.pdb','mov',3) > cmd.load('morph_4.pdb','mov',4) > cmd.load('morph_5.pdb','mov',5) > cmd.load('morph_6.pdb','mov',6) > cmd.load('morph_7.pdb','mov',7) > cmd.load('morph_8.pdb','mov',8) > cmd.load('morph_9.pdb','mov',9) > cmd.load('morph_10.pdb','mov',10) > cmd.load('morph_11.pdb','mov',11) > cmd.load('morph_12.pdb','mov',12) > cmd.load('morph_13.pdb','mov',13) > cmd.load('morph_14.pdb','mov',14) > cmd.load('morph_15.pdb','mov',15) > cmd.load('morph_16.pdb','mov',16) > cmd.load('morph_17.pdb','mov',17) > cmd.load('morph_18.pdb','mov',18) > cmd.load('morph_19.pdb','mov',19) > cmd.load('morph_20.pdb','mov',20) > cmd.load('morph_21.pdb','mov',21) > cmd.load('morph_22.pdb','mov',22) > cmd.load('morph_23.pdb','mov',23) > cmd.load('morph_24.pdb','mov',24) > cmd.load('morph_25.pdb','mov',25) > cmd.load('morph_26.pdb','mov',26) > cmd.load('morph_27.pdb','mov',27) > cmd.load('morph_28.pdb','mov',28) > cmd.load('morph_29.pdb','mov',29) > cmd.load('morph_30.pdb','mov',30) > cmd.load('morph_31.pdb','mov',31) > cmd.load('morph_32.pdb','mov',32) > cmd.load('morph_33.pdb','mov',33) > cmd.load('morph_34.pdb','mov',34) > cmd.load('morph_35.pdb','mov',35) > cmd.load('morph_36.pdb','mov',36) > cmd.load('morph_37.pdb','mov',37) > cmd.load('morph_38.pdb','mov',38) > cmd.load('morph_39.pdb','mov',39) > cmd.load('morph_40.pdb','mov',40) > cmd.load('morph_41.pdb','mov',41) > cmd.load('morph_42.pdb','mov',42) > cmd.load('morph_43.pdb','mov',43) > cmd.load('morph_44.pdb','mov',44) > cmd.load('morph_45.pdb','mov',45) > cmd.load('morph_46.pdb','mov',46) > cmd.load('morph_47.pdb','mov',47) > cmd.load('morph_48.pdb','mov',48) > cmd.load('morph_49.pdb','mov',49) > cmd.load('morph_50.pdb','mov',50) > > # set the representation view > > cmd.set_view ('\ > 0.240646839, -0.036490399, -0.969925761,\ > -0.966329098, -0.102786615, -0.235887647,\ > -0.091088466, 0.994032860, -0.059996925,\ > 0.000000000, 0.000000000, -165.517150879,\ > 39.621959686, 44.060478210, 34.410861969,\ > 130.494979858, 200.539321899, 0.000000000') > > cmd.hide('everything','mov') > cmd.show('cartoon','mov') > > # make a 180 degrees rotation of the first image > # frame 1-120 of state 1 > > cmd.mset ('1 x120') > util.mroll(1,120,1) > > # move between morphs > # show state 1 during 30 frames - then step from state 1 to 50 > # and show state 50 during 30 frames - then step from state 50 > # to 1 = 160 frames > > cmd.mset ('1 x30 1 -50 50 x30 50 -1') > > Any suggestions of what might be wrong? > > Best regards / > > Magnus > > > -- > Magnus Andersson, PhD > > Biostructural Research > > Dept. Medicinal Chemistry > > Faculty of Pharmaceutical Sciences > > University of Copenhagen > > Phone: +45 353 36499 > > Fax: +45 353 36040 > > Mobile: +46 707 346545 > > E-mail: m...@farma.ku.dk > > > ------------------------------------------------------------------------ -- > ---- > Apps built with the Adobe(R) Flex(R) framework and Flex Builder(TM) are > powering Web 2.0 with engaging, cross-platform capabilities. Quickly and > easily build your RIAs with Flex Builder, the Eclipse(TM)based development > software that enables intelligent coding and step-through debugging. > Download the free 60 day trial. http://p.sf.net/sfu/www-adobe-com > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users > > >
