Obviously that should read 'resn asn' in stead of 'resn asp'. Sorry for that.
Tsjerk On Tue, Mar 31, 2009 at 9:56 PM, Tsjerk Wassenaar <tsje...@gmail.com> wrote: > Hi Nir, > > Pymol just draws bonds based on distances, not based on topological > information. If atoms are within contact distance, a bond will be > drawn, whatever the atoms are. If one feels need for an additional > bond, it is possible to add them using: > > bond selection1, selection2 > > This will draw bonds between all atoms of selection1 and all atoms of > selection2. In Thierry's case it would be something like: > > bond resi X and resn asp and name CD, resi Y and resn lys and name NZ > > assuming this is about a side chain - side chain amide bond. > > Hope it helps, > > Tsjerk > > > On Tue, Mar 31, 2009 at 9:14 PM, Nir London <n...@rosettadesigngroup.com> > wrote: >> Hi, Can anyone help thierry ? >> http://rosettadesigngroup.com/blog/10/pymol-scripts/#comment-3149 >> " I would like to ask to make a special bond in pymol. Actually in my >> protein I have a real covalent bond between an Asn and a Lys.. Obviously, >> Pymol doesn’t know how to draw it. Can you help me ? >> Thanks. " >> thierry >> >> Nir London. >> Rosetta Design Group. >> http://rosettadesigngroup.com/blog/ >> ------------------------------------------------------------------------------ >> >> _______________________________________________ >> PyMOL-users mailing list >> PyMOL-users@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/pymol-users >> >> > > > > -- > Tsjerk A. Wassenaar, Ph.D. > Junior UD (post-doc) > Biomolecular NMR, Bijvoet Center > Utrecht University > Padualaan 8 > 3584 CH Utrecht > The Netherlands > P: +31-30-2539931 > F: +31-30-2537623 > -- Tsjerk A. Wassenaar, Ph.D. Junior UD (post-doc) Biomolecular NMR, Bijvoet Center Utrecht University Padualaan 8 3584 CH Utrecht The Netherlands P: +31-30-2539931 F: +31-30-2537623
