Hi Peter, On Fri, 03 Apr 2009 02:38:03 +0530, peter hudson <peter.hudson.pe...@gmail.com> wrote:
> Hello all > > I am trying to upload the ED map on pymol. but, it is not visible on the > screen. Although i checked at pymol wiki and i did as it is given on the > wiki. > For example. > > I took ccp4 format map and coverted it into xplor format with > mapman.(beacuse i tried with ccp4 format map with test_file.map as well as > test_file.ccp4 maps, but pymol showed this kind of error. I begin like this- Warren answered the later problem regarding the "site" selection or object. You should be able to load a ccp4 map either directly as a .ccp4 file, or to force it to load as a ccp4 format with: load test_file.ccp4, map, format=ccp4 Does PyMOL complain that it doesn't know the format with an error like: PyMOL>load test_ccp4.map Error: .map is ambiguous. Please add format or use another extension: Error: For example, "load fofc.map, format=ccp4" or "load 2fofc.xplor". or was the error that you couldn't display the map on the molecule (as in the error that Warren commented on about using "site" as a selection when site has not been defined? Also be aware that PyMOL needs to have a map that is calculated to cover the molecule that you are showing since it does not automatically extend the map using symmetry. Cheers, Rob -- Robert L. Campbell, Ph.D. Senior Research Associate/Adjunct Assistant Professor Botterell Hall Rm 644 Department of Biochemistry, Queen's University, Kingston, ON K7L 3N6 Canada Tel: 613-533-6821 Fax: 613-533-2497 <robert.campb...@queensu.ca> http://pldserver1.biochem.queensu.ca/~rlc
