Hi,
I've been trying to get PyMOL to display a double bond at the position of
the vinyl in the attached, small-moleculePDB for some time. The PDB was
generated by converting a smiles representation of isopentenly diphosphate
(obtained from PubChem) using Corina. The number of attached atoms at the
vinyl group is correct, but PyMOL doesn't display the double bond. Cycling the
bond valence produces a single-bond version (with added protons), but stops
there - it won't cycle through triple, double, single. Downloaded a PDB of
fumarate that does display double bonds in response to Set Valence - so, my
version of PyMOL (1.1beta2, Vista environment) seems fine.
Thoughts?
Thanks,
TomBEGIN:VCARD VERSION:2.1 N:Leyh;Thomas;S.;Ph.D FN:Thomas S. Leyh ORG:AECOM;Biochemistry TEL;WORK;VOICE:718-430-2857 TEL;WORK;FAX:718-430-8565 ADR;WORK;ENCODING=QUOTED-PRINTABLE:;;Rm. 305 Forchh. Bldg.=0D=0A1300 Morris Park Ave.;Bronx;NY;10461 LABEL;WORK;ENCODING=QUOTED-PRINTABLE:Rm. 305 Forchh. Bldg.=0D=0A1300 Morris Park Ave.=0D=0ABronx, NY 10461 EMAIL;PREF;INTERNET:l...@aecom.yu.edu REV:20090514T171123Z END:VCARD
isopentenly diphosphate.pse
Description: Binary data
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