Dear Joseph, On Tue, 07 Jul 2009 11:00:10 +0200, Andre Joseph <andrejos...@gmail.com> wrote:
> Dear Delano Scientific support > > I've been fetching source code from the sourceforge repositories yesterday. > I've no error or warning during "./configure", "make" or "make install" > steps. > However, when I launch pymol, I've the following error: > > Traceback (most recent call last): > > File "/home/joseph/software/pymol/modules/launch_pymol.py", line 32, in > > <module> > > import pymol > > File "/home/joseph/software/pymol/modules/pymol/__init__.py", line 472, > > in <module> > > import _cmd > > ImportError: /home/joseph/software/pymol/modules/pymol/_cmd.so: undefined > > symbol: molfile_vaspparchgplugin_init > > > I've found in the archive that it might come from a problem in "setup.py" > file but I couldn't figure out what was missing (http://tinyurl.com/ndpafb). > I've been building PyMOL from source for a year or so and never faced up any > problem. Could it come from the sources or is a problem of dependancies? I think the recommended way of building PyMOL is with these commands (see the "INSTALL" file): python setup.py build python setup.py install python setup2.py install Since I install it in a non-standard location (an NFS file server accessible from many workstations of both i686 and x86_64 versions of Linux), I add a prefix to the install command: python setup.py install --prefix=/software/Linux or python setup.py install --prefix=/software/Linux_x86_64 Then I keep a saved and modified copy of the pymol script created by the "python setup2.py install" command and copy that back over the newly created "pymol" script instead (because I have a few customizations in it). Cheers, Rob -- Robert L. Campbell, Ph.D. Senior Research Associate/Adjunct Assistant Professor Botterell Hall Rm 644 Department of Biochemistry, Queen's University, Kingston, ON K7L 3N6 Canada Tel: 613-533-6821 Fax: 613-533-2497 <robert.campb...@queensu.ca> http://pldserver1.biochem.queensu.ca/~rlc ------------------------------------------------------------------------------ Enter the BlackBerry Developer Challenge This is your chance to win up to $100,000 in prizes! For a limited time, vendors submitting new applications to BlackBerry App World(TM) will have the opportunity to enter the BlackBerry Developer Challenge. See full prize details at: http://p.sf.net/sfu/blackberry _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
