Stuart, Hmm...it appear that QuietException is being thrown when the input pattern fails to match any valid object name (but without an error message being printed).
The easiest immediate workaround is to simply swallow the exception. for i in range(10): try: cmd.color(colors[i], "sym0" + str(i) + "*") except cmd.QuietException: pass Cheers, Warren ________________________________________ From: Stuart Ballard [mailto:srball...@wisc.edu] Sent: Wednesday, August 26, 2009 4:35 PM To: pymol-users Subject: [PyMOL] Inexplicable exception raised by cmd.color() Hello Warren, all, When attempting to execute this block of code: colors = ["red","orange","yellow","green","blue","purple","salmon","grey","pink","teal","brown"] for i in range(10): cmd.color(colors[i], "sym0" + str(i) + "*") The following error message is displayed: Traceback (most recent call last): File "/Users/delwarl/MacPyMOL090405/build/Deployment-py25/MacPyMOL.app/pymol/modules/pymol/parser.py", line 153, in parse File "<string>", line 3, in <module> File "/Users/delwarl/MacPyMOL090405/build/Deployment-py25/MacPyMOL.app/pymol/modules/pymol/viewing.py", line 2425, in color QuietException: <pymol.parsing.QuietException instance at 0x104ea698> Furthermore, the object corresponding to sym00* is colored red, as expected. I've looked up the code in parser.py and viewing.py which generates the exception itself, and that has shed no light. Function color in viewing.py is as follows: # preprocess selection selection = selector.process(selection) color = _self._interpret_color(_self,str(color)) # r = DEFAULT_ERROR try: _self.lock(_self) r = _cmd.color(_self._COb,str(color),str(selection),int(flags),int(quiet)) finally: _self.unlock(r,_self) if _self._raising(r,_self): raise QuietException return r Any explanation of the bug, or an effective workaround would be greatly appreciated. Thanks, Stuart Ballard Dept. of Biochemistry UW-Madison ------------------------------------------------------------------------------ Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day trial. Simplify your report design, integration and deployment - and focus on what you do best, core application coding. Discover what's new with Crystal Reports now. http://p.sf.net/sfu/bobj-july _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net