Tirumala,
There are a few ways you can do this. I suggest trying "grid_mode".
Copy/paste this into PyMOL.
fetch 1cbs 1hmt, async=0
# align them; in grid_mode, the best view is when proteins
# have the same center of mass
align 1cbs, 1hmt
# same as choosing, A > Action > Generate > Vacuum Electrostatics, for 1cbs
util.protein_vacuum_esp("1cbs")
util.protein_vacuum_esp("1hmt")
# turn on grid mode
set grid_mode, 1
# put all 1cbs stuff into slot 1
set grid_slot, 1, 1cbs*
# put all 1hmt stuff into slot 2
set grid_slot, 2, 1hmt*
Hope that helps,
Jason Vertrees, PhD
PyMOLWiki -- http://www.pymolwiki.org
On Wed, Nov 4, 2009 at 10:34 AM, Tirumala Kumar Chowdary
<tirumala.chowd...@tufts.edu> wrote:
> Hi All,
>
> I am trying to make a figure with electrostatic potential surfaces of
> two different molecules next to each other zoomed to the same level.
>
> Is there a way set the zoom level for the new objects to be loaded in
> to pymol?
>
> Loading both the objects in one session overlaps the bar showing the
> -ve and +ve potential limits. So, I am trying to do it in two different
> pymol windows. But, can't get both the images to zoom to the same
> level. Can I specify zoom setting through command line to some thing
> other than the 4,8,12,20 Å spheres. ?
>
> Thanks in advance for suggestions
>
> Tirumal
>
>
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