Hi all!
Thanks for the link and the tutorial.
We also have been using PyMOL and Blender for some scientific 
animations. Indeed, during the Blender Conference in Amsterdam 
last october, we witnessed several presentations of people 
using Blender in academics/research setting, and have recently 
started a new forum for such users in 
http://www.blender.org/forum/viewforum.php?f=21&sid=c4bebca2b3c6253663fc663aa2eb0b75.
Shiven, would you like to post your work there as well?

Our work at present is mostly done via scripting,  but the 
preparation of a human-friendly interface and of some tutorial 
is on the top of our todo list.In the meantime, if you wish to 
use/test our scripts, please ask, we will be glad to send 
them.
  An idea of our progress can be found on our website 
www.scivis.ifc.cnr.it You 'll find some movies, biological 
explanatory notes and papers describing the work.

Comments are welcome!!

Raluca



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