Michael, I don't think this is possible with PyMOL. Distance measures are calculated from objects.
-- Jason -- Jason Vertrees, PhD [email protected] PyMOL Product Manager Schrodinger, Inc. On Fri, Jan 8, 2010 at 7:05 PM, Michael Zimmermann <[email protected]> wrote: > Dear PyMol users, > > I wonder if anyone knows a way to select atoms that are near a region > of electron density. > > Say I have a binding pocket in atomic detail, but the ligand binds > transiently and non-specifically, so I just have an approximate > electron density could for it. Is it possible to select atoms in an > object that are near to these density levels? Alternatively, can you > turn a map into an object that can be used in this way (fill it with > dummy atoms)? > > Thank you, > > Michael Zimmermann > > ------------------------------------------------------------------------------ > This SF.Net email is sponsored by the Verizon Developer Community > Take advantage of Verizon's best-in-class app development support > A streamlined, 14 day to market process makes app distribution fast and easy > Join now and get one step closer to millions of Verizon customers > http://p.sf.net/sfu/verizon-dev2dev > _______________________________________________ > PyMOL-users mailing list ([email protected]) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/[email protected] > ------------------------------------------------------------------------------ This SF.Net email is sponsored by the Verizon Developer Community Take advantage of Verizon's best-in-class app development support A streamlined, 14 day to market process makes app distribution fast and easy Join now and get one step closer to millions of Verizon customers http://p.sf.net/sfu/verizon-dev2dev _______________________________________________ PyMOL-users mailing list ([email protected]) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/[email protected]
