Dear PyMOL users, I have browsed the wiki and the first 300 mailing list messages in the archive (the sourceforge archive does not seem to have a search set up for the archive... arg!), but did not find any details about the algorithms behind 'fit' and 'super.' I understand how align works, and it sounds like fit is align but without the processing steps (assumes 1:1 correspondence). Super, on the other hand, sounds more like CE since it is sequence independent, but I cannot find any corroboration on this.
I want to run CE or a like algorithm (sequence independent - only concerned with spacial arrangement of alpha carbons) on a large dataset and want to know my options in terms of speed and accuracy. Sincerely, Mike Z ------------------------------------------------------------------------------ The Planet: dedicated and managed hosting, cloud storage, colocation Stay online with enterprise data centers and the best network in the business Choose flexible plans and management services without long-term contracts Personal 24x7 support from experience hosting pros just a phone call away. http://p.sf.net/sfu/theplanet-com _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
