I'm afraid not.
You should use docking programs (
http://en.wikipedia.org/wiki/Macromolecular_docking).
Cheers,
Annalisa

2010/2/24 mohan raj <mohanrajdec2...@gmail.com>

> hi all:
>
>     i am a new to pymol. could some one tell me more about the programs
> involved in ligand interaction.....
>
>    could i do protein protein interaction simulateions using pymol???
>
>
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Try the new software tools for yourself. Speed compiling, find bugs
proactively, and fine-tune applications for parallel performance.
See why Intel Parallel Studio got high marks during beta.
http://p.sf.net/sfu/intel-sw-dev
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