Hi Tassos, Perhaps your pdb file has something in the segid column? For some reason Pymol cannot draw a connected cartoon if you values in the segid column so simply remove them.
hope that solves your problem, Eric __________________________ Eric Larson, PhD MSGPP Consortium Department of Biochemistry Box 357742 University of Washington Seattle, WA 98195 On Thu, 4 Mar 2010, pymol-users-requ...@lists.sourceforge.net wrote: > Send PyMOL-users mailing list submissions to > pymol-users@lists.sourceforge.net > > To subscribe or unsubscribe via the World Wide Web, visit > https://lists.sourceforge.net/lists/listinfo/pymol-users > or, via email, send a message with subject or body 'help' to > pymol-users-requ...@lists.sourceforge.net > > You can reach the person managing the list at > pymol-users-ow...@lists.sourceforge.net > > When replying, please edit your Subject line so it is more specific > than "Re: Contents of PyMOL-users digest..." > > > Today's Topics: > > 1. disconnected loop in pymol (Anastassis Perrakis) > > > ---------------------------------------------------------------------- > > Message: 1 > Date: Wed, 3 Mar 2010 15:40:40 +0100 > From: Anastassis Perrakis <a.perra...@nki.nl> > Subject: [PyMOL] disconnected loop in pymol > To: <pymol-users@lists.sourceforge.net> > Message-ID: <690b3058-e90b-4a06-843c-1dfd50904...@nki.nl> > Content-Type: text/plain; charset="us-ascii" > > Dear all, > > I have a small domain which is mostly loops, its a Cys-knot. > All residues are in the preferred Rama regions, and all atoms are > present in the PDB, > but Pymol decides to 'break' my cartoon! > > Would anyone have a solution to force pymol draw a nice loop where the > break is? > (see small image attached) > > Thanks in advance, > > Tassos > > > > -------------- next part -------------- > A non-text attachment was scrubbed... > Name: pastedGraphic.jpg > Type: image/jpeg > Size: 38631 bytes > Desc: pastedGraphic.jpg > -------------- next part -------------- > > > ------------------------------ > > ------------------------------------------------------------------------------ > Download Intel® Parallel Studio Eval > Try the new software tools for yourself. Speed compiling, find bugs > proactively, and fine-tune applications for parallel performance. > See why Intel Parallel Studio got high marks during beta. > http://p.sf.net/sfu/intel-sw-dev > > ------------------------------ > > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users > > > End of PyMOL-users Digest, Vol 46, Issue 2 > ****************************************** > ------------------------------------------------------------------------------ Download Intel® Parallel Studio Eval Try the new software tools for yourself. Speed compiling, find bugs proactively, and fine-tune applications for parallel performance. See why Intel Parallel Studio got high marks during beta. http://p.sf.net/sfu/intel-sw-dev _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
