Assuming there are separate residues for each molecule, do they have a residue name defined? So you can do something like "select r. OLE"?
-David On Mon, Mar 22, 2010 at 7:56 AM, Michael Doig <[email protected]> wrote: > I am wondering how to select molecules in Pymol. > > The system I am studying has an amide of interest (oleamide) in oil (At > the moment just dodecane molecules). > I have seen in the manual how to select individual elements, but is it > possible to select either the Nitrogen or oxygen in my oleamide > molecules, and then select all atoms which are bonded to this to > therefore select the entire oleamide molecule. > > Or is it possible to define a molecule by defining a chain of elements > (e.g. define a C12H36 chain for dodecane). I have tried just using the > mouse to select individual molecules but find it very difficult to do > depending on where in my system a particular molecule is. > > I'm probably just being really stupid, but I couldn't see it in the > manual or the wiki. > > > Thanks. > Michael. > > -- > The University of Edinburgh is a charitable body, registered in > Scotland, with registration number SC005336. > > > ------------------------------------------------------------------------------ > Download Intel® Parallel Studio Eval > Try the new software tools for yourself. Speed compiling, find bugs > proactively, and fine-tune applications for parallel performance. > See why Intel Parallel Studio got high marks during beta. > http://p.sf.net/sfu/intel-sw-dev > _______________________________________________ > PyMOL-users mailing list ([email protected]) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/[email protected] > ------------------------------------------------------------------------------ Download Intel® Parallel Studio Eval Try the new software tools for yourself. Speed compiling, find bugs proactively, and fine-tune applications for parallel performance. See why Intel Parallel Studio got high marks during beta. http://p.sf.net/sfu/intel-sw-dev _______________________________________________ PyMOL-users mailing list ([email protected]) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/[email protected]
