PyMol doesn't provide programmatic access to actual bond objects. Instead, you have to do what was suggested 5 days ago:
http://www.mail-archive.com/pymol-users@lists.sourceforge.net/msg07745.html -David On Tue, Mar 23, 2010 at 3:48 PM, hari jayaram <hari...@gmail.com> wrote: > Hi > I want to write a python/pymol script that will give me residue -residue > distances within a pdb file programmatically > I know that within pymol I can get a distance object using > select r55 , chain A and resi 55 > select r 22 , chain A and resi 22 > distance (r55) ,(r22) > This creates the dist01 object . If I wanted to do this using a python > script and get a pretty print of all the distances in the distance object , > how do I do that? > Also pointers to other python toolkits that can allow me to make such > measurements outside pymol will be greatly appreciated. > Thanks for your help > Hari > > > ------------------------------------------------------------------------------ > Download Intel® Parallel Studio Eval > Try the new software tools for yourself. Speed compiling, find bugs > proactively, and fine-tune applications for parallel performance. > See why Intel Parallel Studio got high marks during beta. > http://p.sf.net/sfu/intel-sw-dev > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > ------------------------------------------------------------------------------ Download Intel® Parallel Studio Eval Try the new software tools for yourself. Speed compiling, find bugs proactively, and fine-tune applications for parallel performance. See why Intel Parallel Studio got high marks during beta. http://p.sf.net/sfu/intel-sw-dev _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
