Hi Jenna, I think you already managed (using 'save'). And of course there are two times as many coordinates in a dimer, so the saved file will be twice the size. By the way, before saving, you might want to make sure the chains get different chain IDs, so you can easily address them later:
alter original,chain="A" alter copied,chain="B" save dimer.pdb Cheers, Tsjerk On Wed, Apr 7, 2010 at 1:34 AM, JiangJiang Liu <jli...@uwo.ca> wrote: > Dear Tsherk : > Thank you so much for your reply on my pymol question. Your suggestions > are helpful to solve the question that has been confused me for so long. > I still have another related question. After I created the dimmer > structure, do you know how to save the new structure as a pdb file? This > created pdb file can be opened by the Microsoft word and have roughly twice > the amount atom coordinates than the monomer pdb file. > Once again thank you for your kindly help! > Sincerely > Jenna -- Tsjerk A. Wassenaar, Ph.D. post-doctoral researcher Molecular Dynamics Group Groningen Institute for Biomolecular Research and Biotechnology University of Groningen The Netherlands ------------------------------------------------------------------------------ Download Intel® Parallel Studio Eval Try the new software tools for yourself. Speed compiling, find bugs proactively, and fine-tune applications for parallel performance. See why Intel Parallel Studio got high marks during beta. http://p.sf.net/sfu/intel-sw-dev _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
