Alaena, The easiest way is to use PyMOL's built-in Molecular Builder. Click on the "Builder" Tab from the upper control window (or see http://pymolwiki.org/index.php/Builder). It should be pretty straightforward.
You can also investigate the "replace" command, with "help replace". To use it, first pick and atom, then type the appropriate replace command. Cheers, -- Jason On Mon, Apr 19, 2010 at 4:27 PM, Alaena Alilin <aali...@gmail.com> wrote: > Hi, > > is it possible to attach a phosphate to a residue? > I used the following commands > > >create Phos, elem p > >show spheres, phos > > but I don't know how to control which amino acid the phosphate is > added to. > I repeated the process two different times, and the amino acid was > added to the same phosphate. > > Any help is much appreciated, > > Alaena > > ------------------------------------------------------------------------------ > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
