Maia, > 1. How can I undo a plugin. By mistake I tried to plugin a program using a > wrong file and now I get an error message every time I open pymol.
Newer versions of PyMOL have a menu option to remove plugins: Plugin > Manage Plugins > Remove. You can also remove a plugin by simply removing the plugin file. PyMOL stores plugins in the Python distribution's "site-packages/pmg_tk/startup" directory. My Mac OS X Fink build has them here: /sw/lib/python2.5/site-packages/pmg_tk/startup/ for example. If you're on Mac or Linux you can try locate pmg_tk/startup or find / -name yourPlugin.py for hints as to the plugin's installed location. > 2. Which plugin allows me to move one structure relative to another. (I want > to do manual docking of one structure into another). You don't need a plugin to move objects. Just use SHIFT-middle-mouse button drag, while in editing mode. If you're starting from one object (eg. protein and ligand come from one file) then split them up: # example fetch 1oky, async=0 # the protein and ligand are one object; now make them two extract myLigand, org Now you can move the myLigand object independently of other objects. Good luck, -- Jason > > Maia > > Jason Vertrees wrote: >> >> PyMOLers, >> >> Due to the popularity of using PyMOL as a portal to other programs and >> integrating programs with PyMOL, we are developing a new Plugin >> Architecture for PyMOL. We have dedicated a page on the PyMOLWiki >> http://www.pymolwiki.org/index.php/PluginArchitecture >> for this discussion. >> >> If you have a desire to be involved in how the architecture is >> developed please add your contact information to that page (or email, >> personally). Even if you don't care much about helping out, you might >> want to stop by and let us know which plugin systems you like and >> which you don't. >> >> Thanks, >> >> -- Jason >> >> > -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
