I suppose you could modify this script to show sticks when you find a H-bond pair. Delete the parts that make the dashed line and label and replace them with "show sticks" or add them to a selection.
http://www.ebi.ac.uk/~gareth/pymol/downloads/scripts/hbond.py Not the nicest solution, but maybe it's helpful... On Sun, May 9, 2010 at 4:09 PM, phani ghanakota <gphanionl...@yahoo.com>wrote: > Hi, > > I have been using the dist command with mode=2 to show hydrogen bonds > around a ligand. Is there a way to make a selection of all the residues in a > protein hydrogen bonding with a ligand, so that I can show them as sticks. > > > Thanks in Advance. > > > > > ------------------------------------------------------------------------------ > > > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > -- Michael Zimmermann Ph.D. student in Bioinformatics and Computational Biology Department of Biochemistry, Biophysics and Molecular Biology Iowa State University
------------------------------------------------------------------------------
_______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
