Hi Maia, Just turn on the setting for one of the proteins instead of globally. If you type the following, set cartoon_side_chain_helper, on it will turn it on for all objects. So, try this instead set cartoon_side_chain_helper, on, protein1
Here's an example: # fetch two proteins, 1cll and 1ggz fetch 1cll 1ggz, async=0 align 1cll, 1ggz # turn on helper for just 1cll set cartoon_side_chain_helper, on, 1cll # show all as cartoon as cartoon # show sticks for residues 40--60 # notice only side chain helper for 1cll show sticks, i. 40-60 Cheers, -- Jason On Tue, May 11, 2010 at 10:49 AM, chern <ch...@ualberta.ca> wrote: > Hi, > I want to use a command to show some main chain atoms (that make hydrogen > bonds with my ligand), but not all of them. When I use side chain helper, > it hides all main chain atoms for different objects, no matter where I put > the command, between the objects in the script etc.Is there a way to have > one object with main-chain atoms, and another object-without them. > > Maia > -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
