Hi Hongbo,
On Wed, 12 May 2010 15:59:36 +0200 Hongbo Zhu
<hongbo....@biotec.tu-dresden.de> wrote:
> You can solve it by adding the following line in the msms_pymol.py you
> downloaded from Robert's page to line 133, right before msms_cmd is defined.
>
> if msms_path.startswith('C:/'): msms_path = '\"%s\"' % (msms_path,)
>
> Basically, your problem was caused by the whitespace in the path to the
> MSMS executable file in Windows systems. By adding quotes to the full
> path solves the problem.
Thanks for that fix. In fact this problem could exist on other systems if
someone happens to use spaces in their directory names, so I've added escaped
quotes to the msms_path in all cases (not just if it starts with 'C:/'. Also
if one used the debug=1 flag, it will print out the MSMS command used to help
identify problems. The new version is on my website.
Cheers,
Rob
--
Robert L. Campbell, Ph.D.
Senior Research Associate/Adjunct Assistant Professor
Botterell Hall Rm 644
Department of Biochemistry, Queen's University,
Kingston, ON K7L 3N6 Canada
Tel: 613-533-6821 Fax: 613-533-2497
<robert.campb...@queensu.ca> http://pldserver1.biochem.queensu.ca/~rlc
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