Hi Tsjerk, I found the reason of the problem. It wasn't a texture error (I checked that before) but for some strange reason if I have the same molecule loaded twice in cartoon with 40% gray and if both are visible I will get that effect. PS : the reason why I have the same pdb open is make it easier to select things).
Thanks for the feed back! Cheers Afonso On Tue, May 18, 2010 at 2:17 PM, Tsjerk Wassenaar <tsje...@gmail.com> wrote: > Hi Afonso, > > I haven't seen this before. It seems to be a different texture. Did > you touch any of the settings (like ray_texture)? Surely you didn't > just use 'ray' after you loaded the structure. It wouldn't have shown > up as cartoon to begin with. If you give the full set of commands you > used, it will probably allow us to pinpoint the cause of a newspaper > being printed on your protein :) > > (oh, and use reply-to-all to keep the discussion on the list :)) > > Cheers, > > Tsjerk > > On Tue, May 18, 2010 at 1:04 PM, Afonso Duarte <afonsomdua...@gmail.com> > wrote: > > Hi Tsjerk, > > > > You are completely right ... I should have included an example. > > This picture was made with > > ray 1200,1200 > > then saved as a png > > I also tried only ray and other values but no luck, I thought it could be > > memory problems but restarting also did not fixed it. > > > > Cheers > > > > Afonso > > > > On Tue, May 18, 2010 at 12:53 PM, Tsjerk Wassenaar <tsje...@gmail.com> > > wrote: > >> > >> Hi Afonso, > >> > >> Can you tell which newspaper? And does it show the date? :) > >> Seriously, it's difficult to make out more, unless you give more > >> information, like a link to the image, or the series of commands you > >> used to get to the point you're at. What you describe might be caused > >> by two interfering surfaces,e.g., trying to show two times the same > >> thing as cartoon. > >> > >> Cheers, > >> > >> Tsjerk > >> > >> On Tue, May 18, 2010 at 12:42 PM, Afonso Duarte < > afonsomdua...@gmail.com> > >> wrote: > >> > Dear All, > >> > > >> > I am making some figures using ray. When the processing is finished I > >> > get a > >> > strange pattern (like newspaper paper pattern) in my cartoon > >> > representations, Spheres and sticks representations are OK only the > >> > cartoon. > >> > I have tried to change the options on the cartoon representation but > >> > without > >> > any sucess. > >> > > >> > Did any body had such problem before? > >> > > >> > Best > >> > > >> > Afonso > >> > > >> > > >> > > ------------------------------------------------------------------------------ > >> > > >> > > >> > _______________________________________________ > >> > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > >> > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > >> > Archives: > http://www.mail-archive.com/pymol-users@lists.sourceforge.net > >> > > >> > >> > >> > >> -- > >> Tsjerk A. Wassenaar, Ph.D. > >> > >> post-doctoral researcher > >> Molecular Dynamics Group > >> Groningen Institute for Biomolecular Research and Biotechnology > >> University of Groningen > >> The Netherlands > > > > > > > > -- > Tsjerk A. Wassenaar, Ph.D. > > post-doctoral researcher > Molecular Dynamics Group > Groningen Institute for Biomolecular Research and Biotechnology > University of Groningen > The Netherlands >
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