dear all,
sorry for a maybe trivial question, but I am not able to solve this problem:
I want to install PyNMR (0.37 for linux) to my Pymol (0.99 for linux).
After installation I get the positive output:
!! PYNMR install has completed.
To run PYNMN, start up pymol, then open the NMR Extension under Plugin.
but when I open Pymol, I get:
Detected 2 CPUs. Enabled multithreaded rendering.
Exception in plugin 'pynmr' -- Traceback follows...
Traceback (most recent call last):
File "/home/nmr/software/pymol/pymol/modules/pmg_tk/PMGApp.py", line 159, in
initialize_plugins
mod.__init__(self)
TypeError: module.__init__() argument 1 must be string, not instance
Error: unable to initialize plugin 'pynmr'.
Well, the plugin appears in the menu as it should, but I only get errors when I
try to load a file there, or do any other action (e. g. the 'working directory'
seems to be wrong also).
Since PyNMR seems to be used widely, I do not think that this is a problem from
the plugin but rather my fault/problem with Pymol...
During installation I get the following:
[r...@04-pm028 pynmr]# install
Running PYNMR installation script.
Checking for the Numeric (numerical python) package.
Numeric was found.
** Good. I have found your PYMOL installation at
/home/nmr/software/pymol/pymol/modules.
>> Install pynmr in: [/home/nmr/software/pymol/pymol/modules] {** I think, it
>> is right to install it into this directory **}
-> installing in /home/nmr/software/pymol/pymol/modules.
running install
running build
running build_py
package init file 'pmg_tk/startup/__init__.py' not found (or not a regular file)
copying pmg_tk/startup/pynmr/Crmsd.py -> build/lib/pmg_tk/startup/pynmr
copying pmg_tk/startup/pynmr/__init__.py -> build/lib/pmg_tk/startup/pynmr
package init file 'pmg_tk/startup/__init__.py' not found (or not a regular file)
running install_lib
copying build/lib/pmg_tk/startup/pynmr/Crmsd.py ->
/home/nmr/software/pymol/pymol/modules/pmg_tk/startup/pynmr
copying build/lib/pmg_tk/startup/pynmr/__init__.py ->
/home/nmr/software/pymol/pymol/modules/pmg_tk/startup/pynmr
byte-compiling
/home/nmr/software/pymol/pymol/modules/pmg_tk/startup/pynmr/Crmsd.py to
Crmsd.pyc
byte-compiling
/home/nmr/software/pymol/pymol/modules/pmg_tk/startup/pynmr/__init__.py to
__init__.pyc
running install_data
copying pmg_tk/startup/pynmr/Crmsd.so ->
/home/nmr/software/pymol/pymol/modules/pmg_tk/startup/pynmr
running install_egg_info
Removing /home/nmr/software/pymol/pymol/modules/pynmr-0.37f-py2.6.egg-info
Writing /home/nmr/software/pymol/pymol/modules/pynmr-0.37f-py2.6.egg-info
!! PYNMR install has completed.
To run PYNMN, start up pymol, then open the NMR Extension under Plugin.
[r...@04-pm028 pynmr]#
whereas __init__.py is an empty file (I don't know it that is relevant)
Any suggestions are welcome,
thank you very much,
Christoph
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