Hi all,
Don't worry it's still there, just under a different command.
Stick_color, stick_transparency, etc are properties of bonds, so it's
best to now use 'set_bond' intead of 'set'. For example,
set_bond stick_transparency, 0.5, objectName
Cheers,
-- Jason
On Fri, May 21, 2010 at 3:13 PM, Michael Zimmermann
<micha...@iastate.edu> wrote:
> Sorry, I didn't mention that I use 1.2r1 on xinXP
> It could be a version difference if the command does not work correctly for
> you.
>
> On Fri, May 21, 2010 at 11:50 AM, Ariel Talavera <talav...@cim.sld.cu>
> wrote:
>>
>> Hi again,
>>
>> Actually it seems that for some reason the comma after the value (0.5)
>> invalidate the command line.
>>
>> Ariel
>>
>> On Fri, 2010-05-21 at 11:40 -0500, Matthew Franklin wrote:
>> > (I'm putting this back on-list)
>> >
>> > That's too bad. It worked for me: PyMOL 1.2r2, Windows XP. Can you set
>> > other properties of this object: color, stick_radius, etc.?
>> >
>> > - Matt
>> >
>> >
>> >
>> > --
>> > Matthew Franklin , Ph.D.
>> > Senior Scientist, ImClone Systems,
>> > a wholly owned subsidiary of Eli Lilly & Company
>> > 180 Varick Street, 6th floor
>> > New York, NY 10014
>> > phone:(917)606-4116 fax:(212)645-2054
>> >
>> >
>> > > -----Original Message-----
>> > > From: Ariel Talavera [mailto:talav...@cim.sld.cu]
>> > > Sent: Friday, May 21, 2010 12:26 PM
>> > > To: Matthew Franklin
>> > > Subject: RE: [PyMOL] stick transparency
>> > >
>> > > Thanks for the very quick answer, but it didn't succeed.
>> > >
>> > > Best,
>> > > Ariel
>> > >
>> > > On Fri, 2010-05-21 at 11:18 -0500, Matthew Franklin wrote:
>> > > Hi Ariel -
>> > >
>> > > Try "set stick_transparency=0.5, peg_1"
>> > >
>> > > - Matt
>> > >
>> > >
>> > > --
>> > > Matthew Franklin , Ph.D.
>> > > Senior Scientist, ImClone Systems,
>> > > a wholly owned subsidiary of Eli Lilly & Company
>> > > 180 Varick Street, 6th floor
>> > > New York, NY 10014
>> > > phone:(917)606-4116 fax:(212)645-2054
>> > >
>> > > > -----Original Message-----
>> > > > From: Ariel Talavera [mailto:talav...@cim.sld.cu]
>> > > > Sent: Friday, May 21, 2010 12:01 PM
>> > > > To: pymol-users@lists.sourceforge.net
>> > > > Subject: [PyMOL] stick transparency
>> > > >
>> > > > Hi there,
>> > > >
>> > > > I am trying to set stick transparency using the following command:
>> > > > set stick_transparency, 0.5, peg_1, but with no success. The problem
>> > > > is
>> > > > with the selection, because if I use instead, set
>> > > > stick_transparency,
>> > > > 0.5, then every thing represented with stick get 50% transparent.
>> > > > Can
>> > > > you help with this? I am using Pymol 1.2 under Ubuntu 10.04.
>> > > >
>> > > > Thanks a lot in advanced,
>> > > >
>> > > > Best regards,
>> > > > Ariel
>> > > >
>> > Confidentiality Note:
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>> > entity named on the e-mail. If the reader of this e-mail is not the
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>> > Thank you.
>>
>>
>>
>>
>> ------------------------------------------------------------------------------
>>
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>
>
>
> --
> Michael Zimmermann
> Ph.D. student in Bioinformatics and Computational Biology
> Department of Biochemistry, Biophysics and Molecular Biology
> Iowa State University
>
> ------------------------------------------------------------------------------
>
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--
Jason Vertrees, PhD
PyMOL Product Manager
Schrodinger, LLC
(e) jason.vertr...@schrodinger.com
(o) +1 (603) 374-7120
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