Sebastian, Welcome to PyMOL. The easiest way to set a valence is by using the Builder. Click on Builder (http://pymolwiki.org/index.php/Builder) from the upper control panel. After that you should see in the builder Bonds: [Create] [Delete] [Cycle] [I] [II] [III] All you have to do now is to click on the singe, double or triple button ([I], [II], [III]) depending which you want and then just click on your bond. It should change to whatever you've selected. You may repeat the process as many times as necessary. Also, once you leave the builder the valences turn are hidden. You can show them again typing set valence in one of the command lines.
Also, since you're new, you might like to know that we have a wiki (http://pymolwiki.org) that is often used by many PyMOLers. It has lots of help and user-supplied documentation about PyMOL. Cheers, -- Jason On Thu, Jun 3, 2010 at 6:36 AM, Sebastian Kruggel <krug...@chemie.uni-hamburg.de> wrote: > dear all, > > i am quite new to pymol and even if i looked up the > documentation i still have two -probably *very* stupid- > questions: > > i can't find a way to label the bond type (single, double, > triple, aromatic) in a multimol2, i didn't even find a way > to select bonds at all... also i don't manage to label the > molecule by name (in these case ATU_flexx_047/8_sis). > > would be great to get a hint, > thanks in advance, > > sebastian > > > -- > Sebastian Kruggel > Institut für Pharmazie > Bundesstr. 45 | Raum 112 (406) > D 20146 Hamburg > > Tel: +49 (0)40 42838-3626 (-3484) > mail: krug...@chemie.uni-hamburg.de > http://www.chemie.uni-hamburg.de/pha/phachem/lemcke/mitarbeiter.html > > ------------------------------------------------------------------------------ > ThinkGeek and WIRED's GeekDad team up for the Ultimate > GeekDad Father's Day Giveaway. ONE MASSIVE PRIZE to the > lucky parental unit. See the prize list and enter to win: > http://p.sf.net/sfu/thinkgeek-promo > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ ThinkGeek and WIRED's GeekDad team up for the Ultimate GeekDad Father's Day Giveaway. ONE MASSIVE PRIZE to the lucky parental unit. See the prize list and enter to win: http://p.sf.net/sfu/thinkgeek-promo _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
