Prija, Electrostatics can be done through the APBS plugin (http://pymolwiki.org/index.php/APBS). Michael Lerner has done a fantastic job on that.
There are many scripts online that will help you calculate the solvent accessible surface area (for various features), but for any loaded object you can always type: get_area objectName and not solvent Last, try "help get_area", its PyMOLWiki page (http://pymolwiki.org/index.php/Get_Area) and another PyMOLWik page for biochemical properties (http://pymolwiki.org/index.php/Displaying_Biochemical_Properties#Surface-Related). Cheers, -- Jason On Mon, Jun 28, 2010 at 12:55 PM, Prija Ponnan <prija.pon...@gmail.com> wrote: > Hello > I want to calculate electrostatic potential and solvant accessible area of > protein. > How can I do the above mentioned calculations using Pymol. > Please guide me using tutorials. > > Thank you > > -- > Prija Ponnan > > ------------------------------------------------------------------------------ > This SF.net email is sponsored by Sprint > What will you do first with EVO, the first 4G phone? > Visit sprint.com/first -- http://p.sf.net/sfu/sprint-com-first > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ This SF.net email is sponsored by Sprint What will you do first with EVO, the first 4G phone? Visit sprint.com/first -- http://p.sf.net/sfu/sprint-com-first _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
