On Fri, 09 Jul 2010 13:46:57 -0400 Vivek Ranjan <vran...@gmail.com> wrote:
> Hello, > > I am trying to run a simple python script from Pymol and cannot run it: <snip> > I saved the above in a file named "axes.py" and put it in the same > directory from where I type "pymol" (on ubuntu linux). Then I type > "run axes.py" in pymol command bar. I get the following error message: > > ***************************************** > Traceback (most recent call last): > File "/usr/local/lib/python2.6/dist-packages/pymol/parser.py", line > 334, in parse > parsing.run_file(path,self.pymol_names,self.pymol_names) > File "/usr/local/lib/python2.6/dist-packages/pymol/parsing.py", line > 455, in run_file > execfile(file,global_ns,local_ns) > IOError: [Errno 2] No such file or directory: 'axes.py' > ******************************************************************* > > Any help ? Try typing the command "pwd" within PyMOL to see if it reports that you are in the directory that you think you are. Also try typing "ls axes.py" to see if it can see it. Are you sure you haven't made a typo in the name of the file? Otherwise I don't see why what you have done shouldn't work. Cheers, Rob -- Robert L. Campbell, Ph.D. Senior Research Associate/Adjunct Assistant Professor Botterell Hall Rm 644 Department of Biochemistry, Queen's University, Kingston, ON K7L 3N6 Canada Tel: 613-533-6821 Fax: 613-533-2497 <robert.campb...@queensu.ca> http://pldserver1.biochem.queensu.ca/~rlc ------------------------------------------------------------------------------ This SF.net email is sponsored by Sprint What will you do first with EVO, the first 4G phone? Visit sprint.com/first -- http://p.sf.net/sfu/sprint-com-first _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
