Hi Leila, It's possible to do it in PyMOL, but the results won't be biophysically meaningful. I suggest you find a webserver or other tool to help with this.
Good luck, -- Jason On Sat, Jul 31, 2010 at 10:03 AM, leila karami <karami.lei...@gmail.com> wrote: > Hi pymol users > > > > I want to generate an initial model structure (PDB file) for the PRH > homeodomain-DNA complex for doing md simulation calculation. There is PDB > file for my PRH homeodomain protein (PDB ID code: 2E1O), but there isn't PDB > file for PRH homeodomain-DNA complex. also, there are PDB files for other > homeodomain protein-DNA complexes as template. > > Is it possible to make this using pymol? > > > > I am beginner in pymol. please guide me > > ------------------------------------------------------------------------------ > The Palm PDK Hot Apps Program offers developers who use the > Plug-In Development Kit to bring their C/C++ apps to Palm for a share > of $1 Million in cash or HP Products. Visit us here for more details: > http://p.sf.net/sfu/dev2dev-palm > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ The Palm PDK Hot Apps Program offers developers who use the Plug-In Development Kit to bring their C/C++ apps to Palm for a share of $1 Million in cash or HP Products. Visit us here for more details: http://p.sf.net/sfu/dev2dev-palm _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
