Fetching different biological units is cool. But can I query the pdb through PyMOL to see what biological units are associated with a pdb? (Could look it up directly, but I like one-stop shopping.)
Thanks. Andreas On Fri, Aug 6, 2010 at 4:14 PM, Jason Vertrees <jason.vertr...@schrodinger.com> wrote: > Hi David, > > You're right. It's fixed now. I'll check the code in later today. > PyMOL understands the types better now and it even works across the > wwPDB servers. The PDB id "3by0" is a good test case; it has pdb, > biounits and density data. > > Test out the new code with: > > # let's fetch from Nihon. > set fetch_host, pdbj > # standard fetching > fetch 3by0 > > # now, let's fetch from the European server > set fetch_host, pdbe > > # test out bio units > fetch 3by0, bioUnit1, type=pdb1 > fetch 3by0, bioUnit2, type=pdb2 > > # back to US server > set fetch_host, pdb > > # grab the 3rd bio unit > fetch 3by0, bioUnit3, type=pdb3 > > # fetch the EDS map > fetch 3by0, type=fofc > > Be warned that by default, PyMOL names objects based on their code, > not type (except for maps), and PyMOL loads objects with the same name > into the same object but increments the state. You can turn this off > with > > set auto_rename_duplicate_objects, > > Cheers, > > -- Jason > ========================================================= Andreas Forster, Research Associate Paul Freemont & Xiaodong Zhang labs Imperial College London ------------------------------------------------------------------------------ This SF.net email is sponsored by Make an app they can't live without Enter the BlackBerry Developer Challenge http://p.sf.net/sfu/RIM-dev2dev _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
