Sebastian,
individual clipping planes for objects has been a long standing request and I
am not sure how far it is the queue. Jason may have some more in-depth insight.
If you really want individual clipping planes for object you need to use PovRay
and play around with bounding boxes. That approach is fairly advanced and
requires some working knowledge of PovRay.
Otherwise I would recommend very carefully moving the clipping planes by hand
(clip far, clip near ...) to get the view you want. Most of the times that
works.
HTH
Carsten
> -----Original Message-----
> From: Sebastian Kruggel [mailto:krug...@chemie.uni-hamburg.de]
> Sent: Thursday, August 19, 2010 7:04 AM
> To: pymol-users@lists.sourceforge.net
> Subject: [PyMOL] clipping single objects e.g. surfaces
>
> dear all,
>
> i just wondered if there is really no way to execute the
> clip-command for a single object. the online help and the
> user guide only gives examples and advices for the hole
> scene, seems i miss something really obvious... but i would
> like to show a (whole) molecule but only parts of its surface.
>
> is there any way to do this in pymol?
> thanks in advance,
> sebastian
>
>
>
> --
> Sebastian Kruggel
> Institut für Pharmazie
> Bundesstr. 45 | Raum 112 (406)
> D 20146 Hamburg
>
> Tel: +49 (0)40 42838-3626 (-3484)
> mail: krug...@chemie.uni-hamburg.de
> http://www.chemie.uni-hamburg.de/pha/phachem/lemcke/mitarbeiter.html
>
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