Hi Sean, Thanks for posting this. I also encountered and took note of this bug when making the figures for your script.
Cheers, -- Jason On Mon, Sep 13, 2010 at 4:55 PM, Sean Law <[email protected]> wrote: > Hi PyMOLers, > > I think there is a bug in PyMOL regarding the "set cartoon_transparency" > setting. According to the PyMOL-Wiki, the arguments are: > > set cartoon_transparency, value, selection > > where the "value" ranges from 0.0-1.0 and the selection is optional. > However, selections that are not entire objects does not seem to function > properly as in other similar settings (e.g. set transparency). I tried the > following test: > > fetch 1bna > hide all > show cartoon > set cartoon_transparency, 0.5, c. a > #It should say "cartoon_transparency set for 280 atoms in object "1bna" > ray > > However, after ray tracing, no part of the object is shown as being > transparent. Of course, when you leave out the optional "selection" then > everything behaves as expected. I hope that this behaviour gets corrected > for the next build. > > Thanks in advance! > > Sean > > ------------------------------------------------------------------------------ > Start uncovering the many advantages of virtual appliances > and start using them to simplify application deployment and > accelerate your shift to cloud computing > http://p.sf.net/sfu/novell-sfdev2dev > > _______________________________________________ > PyMOL-users mailing list ([email protected]) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/[email protected] > -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) [email protected] (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ Start uncovering the many advantages of virtual appliances and start using them to simplify application deployment and accelerate your shift to cloud computing. http://p.sf.net/sfu/novell-sfdev2dev _______________________________________________ PyMOL-users mailing list ([email protected]) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/[email protected]
