Hi Sebastian, If 'lig' is a defined object or selection, try
show surface, poly within 5 of lig Your selection could also be: show surface, (not org) and (org around 5) which show the surface for all atoms that are not organic (so, polymer or solvent) and those atoms within 5 of org. I still prefer the first selection. Cheers, -- Jason On Fri, Sep 24, 2010 at 10:46 AM, Sebastian Kruggel <[email protected]> wrote: > dear pymol users, > > i installed the VASCo plugin to display surface properties > (thanks for the hint) and it does a very good job! I just > wanted to display only parts of my generated surface > <prot.pdb_00_np> which are near to my ligand <lig> with > something like > > > hide surface, prot.pdb_00_np and not lig around 5 > > which does not work at all. if i try hide everything, the > surface indeed disappears - but than my selection does not > work... > has anybody an idea? > > thanks in advance, > sebastian > > > > -- > Sebastian Kruggel > Institut für Pharmazie > Bundesstr. 45 | Raum 112 (406) > D 20146 Hamburg > > Tel: +49 (0)40 42838-3626 (-3484) > mail: [email protected] > http://www.chemie.uni-hamburg.de/pha/phachem/lemcke/mitarbeiter.html > > ------------------------------------------------------------------------------ > Start uncovering the many advantages of virtual appliances > and start using them to simplify application deployment and > accelerate your shift to cloud computing. > http://p.sf.net/sfu/novell-sfdev2dev > _______________________________________________ > PyMOL-users mailing list ([email protected]) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/[email protected] > -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) [email protected] (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ Start uncovering the many advantages of virtual appliances and start using them to simplify application deployment and accelerate your shift to cloud computing. http://p.sf.net/sfu/novell-sfdev2dev _______________________________________________ PyMOL-users mailing list ([email protected]) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/[email protected]
