I want to create a Pseudoatom in the center of a benzene ring for a ligand.
I can easily create a Pseudoatom in the center of aromatic ring of amino acids in a protein by following the instructions give at http://www.pymolwiki.org/index.php/Pseudoatom i.e load $TUT/1hpv.pdb pseudoatom pi_cent,b/53/cg+cz However I am not sure how I can do similar thing for the lignad. The lignad I have is an indole derivative and I want to create a pseudoatom in the center of the 6 member ring of the indole. Please suggest me some thing how I can use selection of this ring to create a pseudoatom in the center. Kind Regards Imtiaz ------------------------------------------------------------------------------ _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
