Hi Tsjerk,
# sets the upper limit for auto defer; -1 = ignore altogether
set auto_defer_builds, -1
# make 1000 states
cmd.read_pdbstr("".join(["MODEL%9d\nATOM 1 CA ALA 1
%8.3f%8.3f%8.3f 1.00 0.00\nENDMDL\n"%(i,i,0,0) for i in
range(1000)]), "test")
set all_states
Cheers,
-- Jason
On Thu, Jan 13, 2011 at 9:13 AM, Tsjerk Wassenaar <tsje...@gmail.com> wrote:
> This should of course have been sent to the list... Apologies.
>
> Tsjerk
>
>
> ---------- Forwarded message ----------
> From: Tsjerk Wassenaar <tsje...@gmail.com>
> Date: Thu, Jan 13, 2011 at 10:47 AM
> Subject: all_states failure with 500 or more models
> To: Jason Vertrees <jason.vertr...@schrodinger.com>
>
>
> Hi Jason,
>
> Another glitch with all_states it seems. When loading a pdb with 500
> frames or more, the OpenGL window starts displaying weird behaviour.
> It doesn't properly respond to changes in the representation for
> instance. If saw the problem with version 1.2r2 on Ubuntu, installed
> through apt-get, as well as with version 1.3 I compiled from SVN on my
> Ubuntu EEE. I didn't have the problem with version 0.99rc6 under
> windows on the same machine (EEE pc).
>
> I've found that I could reproduce the problem on the command line:
>
> # This works fine (499 models)
> cmd.read_pdbstr("".join(["MODEL%9d\nATOM 1 CA ALA 1
> %8.3f%8.3f%8.3f 1.00 0.00\nENDMDL\n"%(i,i,0,0) for i in
> range(499)]), "test")
> set all_states,1
> # Play around with showing spheres, hiding spheres, etc
> set all_states,0
> delete test
>
> # Whereas this fails
> cmd.read_pdbstr("".join(["MODEL%9d\nATOM 1 CA ALA 1
> %8.3f%8.3f%8.3f 1.00 0.00\nENDMDL\n"%(i,i,0,0) for i in
> range(500)]), "test")
> set all_states,1
> # Play around TRYING showing spheres, hiding spheres, etc
>
> If you need more information, please let me know.
>
> Cheers,
>
> Tsjerk
>
> --
> Tsjerk A. Wassenaar, Ph.D.
>
> post-doctoral researcher
> Molecular Dynamics Group
> * Groningen Institute for Biomolecular Research and Biotechnology
> * Zernike Institute for Advanced Materials
> University of Groningen
> The Netherlands
>
>
>
> --
> Tsjerk A. Wassenaar, Ph.D.
>
> post-doctoral researcher
> Molecular Dynamics Group
> * Groningen Institute for Biomolecular Research and Biotechnology
> * Zernike Institute for Advanced Materials
> University of Groningen
> The Netherlands
>
> ------------------------------------------------------------------------------
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--
Jason Vertrees, PhD
PyMOL Product Manager
Schrodinger, LLC
(e) jason.vertr...@schrodinger.com
(o) +1 (603) 374-7120
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