Hi Alexander, There are two quick ways to do this:
(1) create CGO text and some offset location from your spheres. See http://www.pymolwiki.org/index.php/CGO_Text. or (2) create psuedoatoms and label those atoms. See http://www.pymolwiki.org/index.php/Pseudoatom. Cheers, -- Jason On Sun, Feb 13, 2011 at 11:35 AM, Alexander Schmitz <schmitz.alexan...@hotmail.com> wrote: > Dear pymol users, > > > > Probably it is an easy to solve problem that I have with pymol, but I > couldn’t find any help on the internet on it this far. What I am trying to > do is the following: > > > > I am using a java program to create a simple pymol script which displays > some spheres in pymol. The preliminary created python-script looks like > this: > > > > from pymol.cgo import * > > from pymol import cmd > > > > spherelist = [ > > COLOR, 0.000, 1.000, 1.000, > SPHERE, 19.041, 22.485, 16.323, 1.0, > > COLOR, 0.000, 1.000, 1.000, > SPHERE, 18.987, 20.458, 17.797, 1.0, > > COLOR, 0.000, 1.000, 0.000, > SPHERE, 26.90574, 21.20171, > 18.23115, 1.0, > > COLOR, 1.000, 0.500, 0.000, > SPHERE, 25.94383, 23.29517, > 13.85017, 1.0, > > ] > > > > cmd.load_cgo(spherelist, 'segment', 1) > > > > so I am creating a list of spheres where each sphere has a color, location > and a radius. I would like to have every sphere labeled in this spherelist, > such that the label that is written in the script is shown next to the > spheres in pymol Is there an easy way to do this? If possible without > running through the whole list again. So the best would be that I define the > label of the sphere directly where it is created, but I can’t figure out > how. > > > > I really appreciate any help on this issue! Thx J > > > > Alexander Schmitz > > > > ------------------------------------------------------------------------------ > The ultimate all-in-one performance toolkit: Intel(R) Parallel Studio XE: > Pinpoint memory and threading errors before they happen. > Find and fix more than 250 security defects in the development cycle. > Locate bottlenecks in serial and parallel code that limit performance. > http://p.sf.net/sfu/intel-dev2devfeb > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ The ultimate all-in-one performance toolkit: Intel(R) Parallel Studio XE: Pinpoint memory and threading errors before they happen. Find and fix more than 250 security defects in the development cycle. Locate bottlenecks in serial and parallel code that limit performance. http://p.sf.net/sfu/intel-dev2devfeb _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
