Hi Johannes, PyMOL's awareness of and capabilities surrounding clipping planes does not allow this functionality. Improving clipping planes is a higher priority, so I hope to have this updated in the near future.
Having said this, you can however, can get the clipping information from PyMOL and write scripts against that yourself to determine atom inclusion. See get_view (http://www.pymolwiki.org/index.php/Get_View) for more help. Cheers, -- Jason On Thu, Feb 24, 2011 at 3:50 AM, Johannes Wollbold <jwollb...@gmx.de> wrote: > Hello, > > I clipped a part of a protein by a slab, by manual, graphical > inspection. Now I want to select the slab and store the clipped atoms as > new molecule (pdb file), in order to sum up the accessible surface area > previously computed by an external program. Unfortunately I didn't find > hints, e.g. in the selection algebra > (http://www.pymolwiki.org/index.php/Selection_Algebra). > > Thanks for your advice. > Johannes > > ------------------------------------------------------------------------------ > Free Software Download: Index, Search & Analyze Logs and other IT data in > Real-Time with Splunk. Collect, index and harness all the fast moving IT data > generated by your applications, servers and devices whether physical, virtual > or in the cloud. Deliver compliance at lower cost and gain new business > insights. http://p.sf.net/sfu/splunk-dev2dev > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ Free Software Download: Index, Search & Analyze Logs and other IT data in Real-Time with Splunk. Collect, index and harness all the fast moving IT data generated by your applications, servers and devices whether physical, virtual or in the cloud. Deliver compliance at lower cost and gain new business insights. http://p.sf.net/sfu/splunk-dev2dev _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
