I have a dimeric protein 3HHZ.....to generate the dimer foll transformations have to be made....the problem is that this is an identity matrix,so will not change anything...can anyone help with this??
how can i get the asymmetric unit to generate dimer?? REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 On Fri, Feb 25, 2011 at 6:40 PM, Hongbo Zhu <hongbo....@biotec.tu-dresden.de > wrote: > Hi, Kanika, > > are you looking for biological units of proteins when you say stable dimer? > If this is the case, I recommend the page: > > http://pdbwiki.org/index.php/Biological_unit > at the bottom of the page you can find four very useful servers for the > determination of biological units of proteins (PQS is not updated anymore): > The Protein Quaternary Structure Server (PQS) [2] or [3] > The Macro-Molecular Structure Database (MSD) [4] or [5] > The Protein Interfaces, Surfaces and Assemblies server (Pisa) [6] > Protein quaternary structure investigation (PiQSi) [7] > > As a matter of fact, the PDB also provides the biological assembly of each > PDB entry for download. More information can be found at: > > http://www.rcsb.org/pdb/static.do?p=education_discussion/Looking-at-Structures/bioassembly_tutorial.html > > If your protein is not from the PDB, you can still try pisa ( > http://www.ebi.ac.uk/msd-srv/prot_int/pistart.html ), which accepts > protein coordinate files uploaded by the users and determines the "stable > dimer" or else-mer of your protein. > > hope these help! > hongbo > > > On 02/25/2011 01:46 PM, kanika sharma wrote: > >> Hi, >> i am working to generate a dimer of my protein..I have made a duplicate >> of my protein....Can any one tell me how to rotate my molecule to get >> maximum stability..??? >> >> >> Regards.. >> Kanika >> >> >> >> >> ------------------------------------------------------------------------------ >> Free Software Download: Index, Search& Analyze Logs and other IT data in >> Real-Time with Splunk. Collect, index and harness all the fast moving IT >> data >> generated by your applications, servers and devices whether physical, >> virtual >> or in the cloud. Deliver compliance at lower cost and gain new business >> insights. http://p.sf.net/sfu/splunk-dev2dev >> >> >> >> _______________________________________________ >> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) >> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net >> > > -- > Hongbo ZHU > Postdoctoral Researcher > Structural Bioinformatics > > Technische Universität Dresden > Biotechnology Center > Tatzberg 47/49 > 01307 Dresden, Germany > > Tel.: +49 (0) 351 463-40083 > Fax: +49 (0) 351 463-40087 > E-Mail: hongbo....@biotec.tu-dresden > Webpage: www.biotec.tu-dresden.de >
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