Hi Ben, Thanks for finding this. A colleague looked into this and says it's fixable. So, we'll have a fix out soon. This is a 10.5-specific numpy issue. Our update release is planned to follow soon to clear up a few small issues.
Cheers, -- Jason On Thu, Mar 24, 2011 at 3:42 PM, Ben Eisenbraun <b...@hkl.hms.harvard.edu> wrote: > Hi Jason et al, > > We just added PyMOL 1.4 to our software environment, and it looks like > Numpy doesn't want to run on 10.5.8 machines: > > PyMOL>import numpy > Traceback (most recent call last): > File "/programs/m/pymol/1.4/MacPyMOL.app/pymol/modules/pymol/parser.py", > line 260, in parse > exec(layer.com2+"\n",self.pymol_names,self.pymol_names) > File "<string>", line 1, in <module> > File > "/programs/m/pymol/1.4/MacPyMOL.app/pymol/ext/lib/python2.7/site-packages/numpy/__init__.py", > line 136, in <module> > import add_newdocs > File > "/programs/m/pymol/1.4/MacPyMOL.app/pymol/ext/lib/python2.7/site-packages/numpy/add_newdocs.py", > line 9, in <module> > from numpy.lib import add_newdoc > File > "/programs/m/pymol/1.4/MacPyMOL.app/pymol/ext/lib/python2.7/site-packages/numpy/lib/__init__.py", > line 4, in <module> > from type_check import * > File > "/programs/m/pymol/1.4/MacPyMOL.app/pymol/ext/lib/python2.7/site-packages/numpy/lib/type_check.py", > line 8, in <module> > import numpy.core.numeric as _nx > File > "/programs/m/pymol/1.4/MacPyMOL.app/pymol/ext/lib/python2.7/site-packages/numpy/core/__init__.py", > line 5, in <module> > import multiarray > ImportError: > dlopen(/programs/m/pymol/1.4/MacPyMOL.app/pymol/ext/lib/python2.7/site-packages/numpy/core/multiarray.so, > 2): no suitable image found. Did find: > /programs/m/pymol/1.4/MacPyMOL.app/pymol/ext/lib/python2.7/site-packages/numpy/core/multiarray.so: > unknown required load command 0x80000022 > > There's some info about this error in this thread on Xcode-users: > > http://lists.apple.com/archives/Xcode-users/2009/Oct/msg00514.html > > And a page about the compressed linkedit loader commands which are the root > cause here: > > http://networkpx.blogspot.com/2009/09/about-lcdyldinfoonly-command.html > > The fix is not entirely clear to me by looking at those sources. It looks > like you'll have to experiment a bit if you want to continue to support > 10.5 users. > > -ben > > -- > | Ben Eisenbraun > | SBGrid Consortium | http://sbgrid.org | > | Harvard Medical School | http://hms.harvard.edu | > > ------------------------------------------------------------------------------ > Enable your software for Intel(R) Active Management Technology to meet the > growing manageability and security demands of your customers. Businesses > are taking advantage of Intel(R) vPro (TM) technology - will your software > be a part of the solution? Download the Intel(R) Manageability Checker > today! http://p.sf.net/sfu/intel-dev2devmar > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ Enable your software for Intel(R) Active Management Technology to meet the growing manageability and security demands of your customers. Businesses are taking advantage of Intel(R) vPro (TM) technology - will your software be a part of the solution? Download the Intel(R) Manageability Checker today! http://p.sf.net/sfu/intel-dev2devmar _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
