On 21:37 Thu 28 Apr , lina wrote: > Error: 1 > <type 'exceptions.IndexError'> Exception in Tk callback > Function: <bound method Autodock.generate_receptor of > <pmg_tk.startup.autodock.Autodock instance at 0x2c31758>> (type: <type > 'instancemethod'>) > Args: () > Traceback (innermost last): > File "/usr/lib/python2.6/dist-packages/Pmw/Pmw_1_3/lib/PmwBase.py", > line 1747, in __call__ > return apply(self.func, args) > File "/usr/local/lib/python2.6/dist-packages/pmg_tk/startup/autodock.py", > line 1898, in generate_receptor > tmp_rec_pdb = os.path.join(self.work_dir(),"receptor.%s.pdb" % sel[0]) > <type 'exceptions.IndexError'>: tuple index out of range > > There is also something like > Batch: prepare_receptor4.py -r /cwd/receptor_1.pdb -o > /cwd/receptor..pdbqt -A checkhydrogens > sh: prepare_receptor4.py: not found
Make sure you've provided the correct path to prepare_receptor4.py and also make sure the file has executable permissions. -- Thanks, Donnie Donald S. Berkholz, Ph.D. Research Fellow James R. Thompson lab, Physiology & Biomedical Engineering Grazia Isaya lab, Pediatric & Adolescent Medicine Medical Sciences 2-66 Mayo Clinic College of Medicine 200 First Street SW Rochester, MN 55905 office: 507-538-6924 cell: 612-991-1321
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