Hi, I am using svn pymol rev 3953 on a 64 bit Ubuntu box. I have a custom script that maps extent of conservation into the b-factor record of a pdb for visualization.
I noticed a small feature in pymol My protein atoms in chain A have b-factors from 0 to 11 to indicate conservation extent , . The Heteroatoms , in this pdb also in chain A have their ususal b-factors in the 60s. Now if I ask for the surface to be colored by bfactors spectrum for *.ca. Pymol echoes Spectrum: range ( 0.00000 to 11.00000). But the colors on the surface clearly also include the heteroatoms .which are all above 55 and in chain A. So the whole protein surface ends up blue since majority of values are below 11. I did get around this by removing the heteroatoms to a different chain . But it seems there is a discrepancy between what is echoed to the stdout and the color-range pymol displays on the screen in this instance. Hope this is not some setting that I am messing up on my side Thanks hari ------------------------------------------------------------------------------ All of the data generated in your IT infrastructure is seriously valuable. Why? It contains a definitive record of application performance, security threats, fraudulent activity, and more. Splunk takes this data and makes sense of it. IT sense. And common sense. http://p.sf.net/sfu/splunk-d2d-c2 _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
