Hi Troels, Thanks--I did forget about carving!
PyMOL still needs easier map extending, though. Cheers, -- Jason 2011/8/24 Troels Emtekær Linnet <tlin...@gmail.com>: > Have you tried this: > > load run02-Protein-ANP-BA_ligands_omitmap.map.ccp4, fofc-map > isomesh +fofc_all, fofc-map, 3 , within_Ba , carve=1.5 > isomesh -fofc_all, fofc-map, -3 , within_Ba , carve=1.5 > color green, +fofc_all > color red, -fofc_all > set mesh_width=0.75, +fofc_all > set mesh_width=0.75, -fofc_all > > > 2011/8/24 Jason Vertrees <jason.vertr...@schrodinger.com> >> >> Hi Claudia, >> >> We can't yet copy/extend maps. For the time being, you need to use >> symmetry expansion on your molecule to get them into the density. See, >> >> * -- http://www.pymolwiki.org/index.php/Symexp >> * -- http://www.pymolwiki.org/index.php/Supercell >> >> Cheers, >> >> -- Jason >> >> On Wed, Aug 24, 2011 at 3:57 PM, DelCampo, Claudia >> <claudia.delca...@umassmed.edu> wrote: >> > >> > Hello, >> > >> > I am trying to display a ccp4 map together with my protein model in >> > Pymol. I followed the directions given in Pymol-wiki: "display ccp4 maps" >> > and I get to see the map but it is not superimposed with the protein >> > structure. How can i get the map to be positioned correctly? >> > >> > Thanks for your help! >> > >> > Post-doc >> > Lambright Lab >> > Program in Molecular Medicine >> > Biotech Two - UMMS >> > Phone:508-856-1087 >> > >> > >> > ------------------------------------------------------------------------------ >> > EMC VNX: the world's simplest storage, starting under $10K >> > The only unified storage solution that offers unified management >> > Up to 160% more powerful than alternatives and 25% more efficient. >> > Guaranteed. http://p.sf.net/sfu/emc-vnx-dev2dev >> > _______________________________________________ >> > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) >> > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >> > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net >> > >> >> >> >> -- >> Jason Vertrees, PhD >> PyMOL Product Manager >> Schrodinger, LLC >> >> (e) jason.vertr...@schrodinger.com >> (o) +1 (603) 374-7120 >> >> >> ------------------------------------------------------------------------------ >> EMC VNX: the world's simplest storage, starting under $10K >> The only unified storage solution that offers unified management >> Up to 160% more powerful than alternatives and 25% more efficient. >> Guaranteed. http://p.sf.net/sfu/emc-vnx-dev2dev >> _______________________________________________ >> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) >> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > > -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ EMC VNX: the world's simplest storage, starting under $10K The only unified storage solution that offers unified management Up to 160% more powerful than alternatives and 25% more efficient. Guaranteed. http://p.sf.net/sfu/emc-vnx-dev2dev _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
