Hi Manas,

You have two options: use volumes
(http://www.youtube.com/watch?v=tuAo_8-_HIc; http://pymol.org/volume)
or

isomesh myMesh, theMap, level=6

To change the isomesh level to 7.5 just do,

isolevel myMesh, 7.5

Cheers,

-- Jason

On Mon, Dec 5, 2011 at 12:49 PM, Manas Sule <[email protected]> wrote:
> I have tried that...but i can see the density in coot at  even 8 sigma..
> however the maximum i can go to in pymol is 4.5 simga on a F0-Fc map
> Can u suggest any method to see the same density at 6 sigma
>
> Manas
>
>
> On Mon, Dec 5, 2011 at 11:14 PM, Pete Meyer <[email protected]> wrote:
>>
>> isomesh [mesh name], [map name], 6.0
>>
>>
>
> ------------------------------------------------------------------------------
> All the data continuously generated in your IT infrastructure
> contains a definitive record of customers, application performance,
> security threats, fraudulent activity, and more. Splunk takes this
> data and makes sense of it. IT sense. And common sense.
> http://p.sf.net/sfu/splunk-novd2d
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-- 
Jason Vertrees, PhD
PyMOL Product Manager
Schrodinger, LLC

(e) [email protected]
(o) +1 (603) 374-7120

------------------------------------------------------------------------------
All the data continuously generated in your IT infrastructure 
contains a definitive record of customers, application performance, 
security threats, fraudulent activity, and more. Splunk takes this 
data and makes sense of it. IT sense. And common sense.
http://p.sf.net/sfu/splunk-novd2d
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