Hi Anasuya, your question is related to this one from September last year: http://www.mail-archive.com/pymol-users@lists.sourceforge.net/msg09588.html
In short (example with heme as ligand): select ligand, chain A and resn HEM select shortrange, byres (polymer within 4.5 of ligand) select midrange, byres ((polymer within 9 of ligand) and not shortrange) Relevant reading: http://www.pymolwiki.org/index.php/Selection_Algebra Cheers, Thomas On 02/28/2012 08:10 PM, Anasuya Dighe wrote: > Hello , > > I want to extract out complete amino acid residues which fall "within a radius > of 4 to 9 Angstroms from the ligand". > > What do I do in such a case, given the pdb id's, chain ID, the name of the > ligand and its residue id? > > PS: I want to avoid, extracting out cmplete residues within a 0-4.5A first AND > THEN getting residues from 4.5-9A. > > Is there a direct way to do this? > > Please let me know. > > - Anasuya > > -- Thomas Holder MPI for Developmental Biology Spemannstr. 35 D-72076 Tübingen ------------------------------------------------------------------------------ Virtualization & Cloud Management Using Capacity Planning Cloud computing makes use of virtualization - but cloud computing also focuses on allowing computing to be delivered as a service. http://www.accelacomm.com/jaw/sfnl/114/51521223/ _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
