Pietro,

This sounds like you could use the "cartoon skip" trick mentioned a
few weeks/months ago
(http://pymolwiki.org/index.php/Cartoon#Breaking_Up_a_Visualization_with_Cartoon_Skip).
Instead of highlight color you can turn on the side chain helper for
one object and off on the other.

Cheers,

-- Jason

On Wed, Mar 14, 2012 at 10:24 AM, Pietro Roversi
<pietro.rove...@path.ox.ac.uk> wrote:
> Thank you Thomas!
>
> Is there a *local* version of Cartoon_side_chain_helper?
> So that I can keep all other strands flat and only allow one
> to "buckle" in correspondence to a single, specific Calpha?
>
> Regards
>
> Pietro
> ________________________________________
> From: Thomas Holder [ad...@thomas-holder.de] On Behalf Of Thomas Holder 
> [spel...@users.sourceforge.net]
> Sent: 13 March 2012 13:33
> To: Pietro Roversi
> Cc: pymol-users
> Subject: Re: [PyMOL] How do I force a cartoon strand throuch a given Calpha?
>
> Hi Petro,
>
> set cartoon_side_chain_helper, 1
>
> http://pymolwiki.org/index.php/Cartoon_side_chain_helper
>
> Cheers,
>   Thomas
>
> On 03/13/2012 01:45 PM, Pietro Roversi wrote:
>> Hello everyone,
>>
>> I am showing the structure in cartoon and a few residues in sticks,
>> I do not want the mainchain atoms only the sidechains, but when
>> I hide the mainchain a few residues in beta sheets
>> lose connectivity to their bet sheet cartoon -
>> how do I force a cartoon strand throuch a given Calpha?
>>
>> Thanks
>>
>> Pietro
>
> --
> Thomas Holder
> MPI for Developmental Biology
> Spemannstr. 35
> D-72076 Tübingen
>
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-- 
Jason Vertrees, PhD
PyMOL Product Manager
Schrödinger, LLC

(e) jason.vertr...@schrodinger.com
(o) +1 (603) 374-7120

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