Hi,
I'm wondering if anyone could tell me if there is a way of running a plugin in
batch mode. I tried running it as a script but does not work when I use pymol
-c or pymol -cq. The script has multiple arguments in the form of a list. I
assign the variables to a list and then use that list to run the script. It
works when the GUI is open (because I can assign values to a variable), but
doesn't when I use -c or -cq (can't assign values from the command line.
File name: example.py
I used the extend command to extend the plugin to the command line (as
described in the plugin tutorial). The end of the file has something like this:
def dosomething(app):
a=tkSimpleDialog.askstring('sumthing',
'Enter variable: ',
parent=app.root)
b=tkSimpleDialog.askstring('sumthing',
'Enter variable: ',
parent=app.root)
c=tkSimpleDialog.askinteger('sumthing',
'Enter variable: ',
parent=app.root)
info=[a, b, c]
do_Something(info)
cmd.extend('do_Something', do_Something)
When the GUI is open, I assign the values of a, b and c to a variable string
like: inf=['a', 'b', c]; by typing into the pymol command line. Then I can run
the plugin using: do_Something(inf)
But I can't assign the values of a, b, and c to inf when using batch mode. I
don't know how to. If anybody has any suggestions, please let me know. I'll be
grateful for any advice.
Thanks in advance
Ritu
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