Dear PyMOL users,
I´m looking for an option to generate animations with changing bonds.
So far:
cmd.load("testm.pqr")
cmd.load("testm1.pqr")
= 2 objects with correct bonding from "conect" entries
load testm.pqr, mov
load testm1.pqr, mov
= trajectory, but only connection table from 1st frame seems to be used
small test structures (only 1 bond removed) are attached, overall
simulations consists of larger structures with substitution reactions and a
large number of time steps - therefore a loop for loading the files should be
possible. The "conect" entries per time frame are calculated in the simulation,
the pqr files are generated using this information, either as single file/time
step or as one file holding all time steps. Connection table reads are not
necessary every single time step, but would be nice every n iterations based on
typical structures changes in the simulations.
I'm rather new to PyMOL, so hopefully you can guide me to a solution.
Kind regards,
Thomas
testm.pqr
Description: Binary data
testm1.pqr
Description: Binary data
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