Hi Georgios Gkouridis, RigiMOL is an Incentive PyMOL feature. To gain access to this, you'll need to purchase a copy of PyMOL.
Cheers, -- Jason On Fri, Jul 13, 2012 at 3:18 PM, <guri...@imbb.forth.gr> wrote: > Dear users, > I would like to create a movie using Pymol between two different > conformations (structures) of a protein 1NL3_coli and 1MN6coli. I read > this can be done with rigimol. I am giving the following commands and > getting an error when giving the following command >> rigimol.morph ( "m_in", "m_out", refinement=5, async=1) > > What do I have to do for this? I am pasting the sequence of all the commands > P.S. I also aligned the two structures. > Thank you in advance very much > Georgios Gkouridis > Post-doc > RUG/Single molecule microscopy > The Netherlands > > > PyMOL>create m_in, 1NL3_coli, 1, 1 > Selector: found 13230 atoms. > Executive: object "m_in" created. > > PyMOL>create m_in, 1MN6coli, 1, 2 > Selector: found 13296 atoms. > > PyMOL>rigimol.morph ( "m_in", "m_out", refinement=5, async=1) > Traceback (most recent call last): > File "C:\Program Files\PyMOL\PyMOL/modules\pymol\parser.py", line > 464, in parse > exec(layer.com2+"\n",self.pymol_names,self.pymol_names) > File "<string>", line 1, in <module> > NameError: name 'rigimol' is not defined > > ---------------------------------------------------------------- > This message was sent using IMBB - WebMail. > > > ------------------------------------------------------------------------------ > Live Security Virtual Conference > Exclusive live event will cover all the ways today's security and > threat landscape has changed and how IT managers can respond. Discussions > will include endpoint security, mobile security and the latest in malware > threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- Jason Vertrees, PhD PyMOL Product Manager Schrödinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
