Dear users,
I would like to create a movie using Pymol between two different
conformations (structures) of a protein 1NL3_coli and 1MN6coli. I read
this can be done with rigimol. I am giving the following commands and
getting an error when giving the following command
> rigimol.morph ( "m_in", "m_out", refinement=5, async=1)
What do I have to do for this? I am pasting the sequence of all the commands
P.S. I also aligned the two structures.
Thank you in advance very much
Georgios Gkouridis
Post-doc
RUG/Single molecule microscopy
The Netherlands
PyMOL>create m_in, 1NL3_coli, 1, 1
Selector: found 13230 atoms.
Executive: object "m_in" created.
PyMOL>create m_in, 1MN6coli, 1, 2
Selector: found 13296 atoms.
PyMOL>rigimol.morph ( "m_in", "m_out", refinement=5, async=1)
Traceback (most recent call last):
File "C:\Program Files\PyMOL\PyMOL/modules\pymol\parser.py", line
464, in parse
exec(layer.com2+"\n",self.pymol_names,self.pymol_names)
File "<string>", line 1, in <module>
NameError: name 'rigimol' is not defined
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