Vitaly, That looks like a bug in an older version of PyMOL. The following,
show cartoon, n. CA should help you out. I do not get this incorrect rendering with PyMOL v1.5.0.4. Cheers, -- Jason On Fri, Oct 12, 2012 at 1:33 PM, V.V. <vvos...@gmail.com> wrote: > Hello, > > I have a protein with a phosphorylated residue, and upon switching to > the cartoon representation the trace is going through the side chain > (please see the attached file). I can work around this by reducing the > protein to CA and setting trace_atoms to "true", but is there a way to > force Pymol to use the backbone atoms for tracing the cartoon? > > Thank you, > Vitaly -- Jason Vertrees, PhD PyMOL Product Manager Schrödinger, Inc. (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ Don't let slow site performance ruin your business. Deploy New Relic APM Deploy New Relic app performance management and know exactly what is happening inside your Ruby, Python, PHP, Java, and .NET app Try New Relic at no cost today and get our sweet Data Nerd shirt too! http://p.sf.net/sfu/newrelic-dev2dev _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
