----------------------------------------
> From: jason.vertr...@schrodinger.com
> Date: Fri, 2 Nov 2012 18:57:38 -0500
> To: pymol-users@lists.sourceforge.net
> Subject: [PyMOL] Mobile PyMOL Problem and Solution
>
> Greetings,
>
> On Oct 28th, the folks at the PDB made some changes to their PDB Web
> Services interface. This change broke Mobile PyMOL's ability to search
> for and download PDBs.
I haven't bothered to look at this specific situation but this a problem with
many sites
and automated interaction. NCBI has a nice eutils interface that has remained
stable
for a while, I'd been trying to get more groups to offer a web interface
designed for
automated interactions. FWIW,
http://www.ncbi.nlm.nih.gov/books/NBK25500/
Do you have automated access to this library for example,
http://www.ncbi.nlm.nih.gov/Structure/index.shtml
they also have their own viwer, for example,
http://www.ncbi.nlm.nih.gov/Structure/CN3D/cn3d.shtml
but pymol seems a bit more extensive.
>
> I have updated Mobile PyMOL and will soon resubmit it to the AppStore
> for verification and release. This process takes typically takes no
> less than 8 days. So, in the meantime for the 7,000 Mobile PyMOL users
> please use the following technique to acquire structures:
> (1) Using Safari on the iPad browse to the www.pdb.org and find the
> structure you want.
> (2) Click "Download Files" from the upper right hand side of the
> structure's page and then select "PDB File (Text)".
> (3) Click "Open in PyMOL".
>
> Happily, as a long-term solution, I've established contact with the
> PDB Web Services Group and we'll now be made aware of future changes.
> The PDB is an extremely valuable resource in the community and I'm
> glad we could work this out.
>
> Cheers,
>
> -- Jason
>
> --
> Jason Vertrees, PhD
> PyMOL Product Manager
> Schrödinger, Inc.
>
> (e) jason.vertr...@schrodinger.com
> (o) +1 (603) 374-7120
>
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