Greetings,
We are happy to announce the final release of PyMOL v1.6.0.0. Official
PyMOL sponsors can download ready-to-use installers as usual from
http://pymol.org/dsc/ip . The open-source code has been pushed to
sourceforge svn (revision 4030) and a downloadable bz2 source file is
also available from http://sf.net/p/pymol/ .
This release completes the transition to GLSL based real-time rendering.
Apart from that, it includes many fixes and improvements.
Changes in both Incentive and Open-Source:
* Completed OpenGL engine update; improved graphics performance.
* High-speed fonts, indicators, and 2D drawables (menus)
* Support sweep_angle setting with "Program > Scene Loop" Nutate/Rock
* Add bz2 support for reading PDB files
* Add support for width/height units in png command
* New command line argument "-y": Exit on error
* Support object=aln argument with alignto command
* VMD plugins have been updated
* New commands: split_chains, mse2met
* Spectrum command enhanced to take color lists like spectrumany
* ANISOU records are now saved if present
* Fixed alignment objects from "super" do not contain N atoms
* Fixed writing PDB files
* END before ENDMDL (SF-3496006)
* always right justify resn (SF-3539436)
* Fixed crash when loading with connect_mode=2
* Fixed shortcut auto-completion with exact prefixes
* Feedback fixes
* Fixed leading whitespace parsing in LITERAL parsing mode
* Fixed reading last ANISOU record from PDB file
* Surface lighting was enhanced/smoothed
* Fixed Scripts ending on "pymol.py"
* Cealign alignment object: support for multiple alignments
Changes in Incentive only:
* Presets for coloring by representation
* Settings
* Most settings are now documented in the Settings > Edit All GUI
* Tk Settings > Edit All GUI refactored to allow window resizing
and mouse wheel scrolling
* Iterate and alter have improved performance
* Morphing updates
* A > generate > morph
* Multi-state morphs
* "ramps" in C (color) menu
* Arbitrary object-level and atom-level properties
* Mouse wheel scrolls object-menu-panel and other scrollable widgets
* Spectrum command enhanced to take the new properties as expression
* Better tracking of hydrogens when editing with the Builder
* Add bz2 support for reading PDB/MAE/MOE/... files
We encourage PyMOL sponsors to check out the internal documentation:
http://pymol.org/dsc/dokuwiki/doku.php?id=media:new16
http://pymol.org/dsc/dokuwiki/doku.php?id=properties
http://pymol.org/dsc/dokuwiki/doku.php?id=media:morphing_updates
We welcome any feedback and bug reports.
Cheers,
- The PyMOL Team at Schrödinger
--
Thomas Holder
PyMOL Developer
Schrödinger Contractor
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